環(huán)境生物化學(xué)與微生物學(xué)
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該學(xué)科組的主要研究領(lǐng)域包括環(huán)境科學(xué)、微生物生態(tài)學(xué)、分子微生物學(xué)、環(huán)境微生物學(xué)、藻類生態(tài)學(xué)、環(huán)境工程學(xué)和恢復(fù)生態(tài)學(xué)等，主旨是著力從生物化學(xué)和微生物的角度深入研究水環(huán)境問題，以期描述污染水體的生態(tài)格局，揭示脅迫的本質(zhì)，并以此為基礎(chǔ)為水環(huán)境改善提供技術(shù)支撐。近期研究焦點包括：?
1）?富營養(yǎng)化的發(fā)生機理與控制技術(shù)研發(fā)，包括功能微生物介導(dǎo)的碳、氮、硫和磷等營養(yǎng)元素的循環(huán)與遷移轉(zhuǎn)化、藻類對營養(yǎng)的利用策略與水華暴發(fā)與演替機理以及基于上述研究結(jié)果研發(fā)的沉積物污染控制技術(shù)、湖濱帶污染攔截與生態(tài)修復(fù)技術(shù)、藍(lán)藻水華防控技術(shù)等。?
2）?環(huán)境微生物與分子技術(shù)研發(fā)，包括細(xì)菌分子遺傳學(xué)與合成生物學(xué)、活性污泥微生物組學(xué)與生物多樣性、微生物氮代謝與氮循環(huán)、水生動物腸道微生物和生物絮團技術(shù)、化工廢水和垃圾滲濾液處理、黑臭水體治理與生態(tài)修復(fù)、藍(lán)藻水華控制和藍(lán)藻生物質(zhì)利用等。?
3）?低污染水處理技術(shù)研發(fā)，包括人工濕地處理技術(shù)、土地處理技術(shù)、生物過濾系統(tǒng)技術(shù)研發(fā)以及相關(guān)產(chǎn)品和裝置研制等。
近年來先后承擔(dān)了國家“十一五”、“十二五”、“十三五”重大科技專項、國家重點研發(fā)計劃-戰(zhàn)略性國際科技創(chuàng)新合作重點專項、國家自然科學(xué)基金重點和面上項目、中國科學(xué)院知識創(chuàng)新工程重要方向項目、交叉項目以及政府間科技合作項目（包括中國-烏克蘭、中國-俄羅斯、中國-波蘭、中國-意大利、中國-保加利亞、中國-丹麥、中國-捷克、中國-匈牙利、中國-斯洛文尼亞、中國-韓國等），已在“Environmental Microbiology”、“Water Research”、 “Environmental Science & Technology”?、?“Applied and Environmental Microbiology” 、“Bioresource Technology”、“Science of the Total Environment”等期刊上發(fā)表SCI收錄論文100余篇。
學(xué)科組長：曹秀云研究員/博士（caoxy@ihb.ac.cn；+86 27 68780221）?
主要成員：?
周易勇研究員/博士 (zhouyy@ihb.ac.cn；+86 27 68780709）?
邱東茹研究員/博士 (qiu@ihb.ac.cn;? +86 27 68780215)?
宋春雷副研究員/博士 (clsong@ihb.ac.cn；+86 27 68780221）?
博士后：萬玲玲博士(wanlingling@ihb.ac.cn)?
李筱炆博士(lixw@ihb.ac.cn)?
袁思亮博士 (yuansl@ihb.ac.cn；?+86 27 68780609)?
近五年主持項目情況:??
1、?國家重點研發(fā)計劃“合成生物學(xué)”專項：“活性污泥人工多細(xì)胞體系構(gòu)建與應(yīng)用”項目子課題，2020-2024，204萬元；?
2、?國家自然科學(xué)基金與歐盟委員會環(huán)境生物技術(shù)合作項目：“合成塑料降解轉(zhuǎn)化微生物菌群”課題3“合成塑料解聚酶的人工設(shè)計與定向進化”任務(wù)3“合成塑料解聚酶的克隆”，2020-2023，55萬元；?
3、?國家自然科學(xué)基金重大研究計劃培育項目：“細(xì)菌反硝化脫氮與異化型硝酸鹽還原氨化的分子決定機制研究”，2018-2020，101萬元；?
4、?國家自然科學(xué)基金面上項目：固氮與非固氮藍(lán)藻營養(yǎng)利用優(yōu)勢的交互作用驅(qū)動其水華演替的機制研究，2022-2025，57萬元；?
5、?國家自然科學(xué)基金青年基金項目：微囊藻水華過程中磷營養(yǎng)競爭優(yōu)勢的耦合機制與啟動條件研究，2022-2024，30萬元；?
6、?國家自然科學(xué)基金青年基金項目：硫循環(huán)在硝酸鹽異化還原為銨和厭氧氨氧化過程及其耦聯(lián)中的作用，2022-2024，30萬元；?
7、?國家自然科學(xué)基金面上項目：微囊藻與長孢藻附著細(xì)菌驅(qū)動的氮轉(zhuǎn)化途徑與機制及其對藻類生長的影響，2021-2024，57萬元；?
8、?國家重點研發(fā)計劃（藍(lán)色糧倉）子課題：基于微生物環(huán)調(diào)控的餌料生物生產(chǎn)力優(yōu)化技術(shù)，2020-2023，65萬元；?
9、?中科院美麗中國項目：陸向岸線景觀斑塊最小保護面積與優(yōu)化空間配置，2019-2023，90萬元；?
10、國家自然科學(xué)基金面上項目：湖泊沉積物硝酸鹽異化還原為銨與反硝化過程的偶聯(lián)作用及其對藻類演替的影響，2019-2022，61萬元。??
11、國家重點研發(fā)計劃：“一帶一路”沿線國家海洋赤潮與低氧等生態(tài)災(zāi)害的發(fā)生機制與早期預(yù)警和應(yīng)急保障系統(tǒng)的關(guān)鍵技術(shù)研究，2017-2022，1469萬元；?
12、“十三五”水專項子課題：清水廊道（水質(zhì)保障）技術(shù)驗證評估與示范應(yīng)用，2018-2022，210萬元；???
13、國家重點研發(fā)計劃（藍(lán)色糧倉）子課題：池塘養(yǎng)殖系統(tǒng)內(nèi)生源要素歸趨及對受納湖泊氮磷循環(huán)的影響機制，2019-2022，80萬元；??
14、國家基金重大研究計劃培育項目：藍(lán)藻以非磷脂類替代磷脂響應(yīng)磷脅迫的生物化學(xué)機制研究，2020-2022，79萬元；??
15、國家自然科學(xué)基金面上項目：巢湖藻類碎屑有機碳調(diào)節(jié)水華種類演替的機制研究，2015-2019，85萬元。??
16、中國科學(xué)院國際人才項目計劃2020國際訪問學(xué)者項目；?
17、政府間國際合作項目若干?；?
18、地方企業(yè)項目若干?。?
近5年發(fā)表文章：?
2022年?
[1]??Gao, N., Dai, J.C., Liu, Y.Q., Li, S.Y., Wang, J., Lu, W.X. and Qiu, D.R.* 2022. Cellulose-mediated floc formation by the activated sludge bacterium?Shinella zoogloeoides?ATCC 19623. BMC Microbiol 22(1).?
[2]??Liu, X.H., Chen, J., Liu, Y., Wan, Z.F., Guo X.C.*, Lu S.Y., Qiu D.R.*. 2022. Sulfamethoxazole degradation by?Pseudomonas silesiensis?F6a isolated from bioelectrochemical technology-integrated constructed wetlands. Ecotox Environ Safe 240: 113698. ?
[3]??Liu, Y.Q., Li, S.Y., Lin, J., Liu, S.Y., Wei, H.H., Dai, J.C., Qiu, D.R.*.?Pseudaquidulcibacter sacchrophilus?gen. nov., sp. nov., a novel member of family Caulobacteraceae, isolated from the outlet of a water purification equipment with starch as a carbon source. Int J Syst Evol Microbiol 72(2). ?
[4]??Gao, J.K.1, Liu, G.L.1, Li, X.W., Tang, M.J., Cao, X.Y., Zhou, Y.Y. and Song, C.L.* 2022. Organic carbon quantity and composition jointly modulate the differentiation of nitrate reduction pathways in sediments of the Chinese eutrophic lake, Lake Chaohu. Water Res 220. ?
[5]??Lin, L.L., Li, Z.W., Zhang, B., Zhang, Q.Q., Qiu, D.R., Herzberg, M., Wu, Z.B. and Xiao, E.R.* 2022. Degradation and utilization of EPS from excessive activated sludge by interaction of electrogenesis and light stimulation. J Environ Chem Eng 10(3). ?
[6]??Song, X.Y., Zhang, Z.H., Dai, Y.R., Cun, D.S., Cui, B.H., Wang, Y.W., Fan, Y.C., Tang, H.B., Qiu, L., Wang, F.H., Qiu, D.R.* and Liang, W.* 2022. Biodegradation of phthalate acid esters by a versatile PAE-degrading strain?Rhodococcus?sp. LW-XY12 and associated genomic analysis. Int Biodeter Biodegr 170. ?
[7]??Yu, H., Yan, X.Z., Weng, W.L., Xu, S.H., Xu, G.Z., Gu, T.Y., Guan, X.T., Liu, S.W., Chen, P.B., Wu, Y.J., Xiao, F.S., Wang, C., Shu, L.F., Wu, B., Qiu, D.R., He, Z.L. and Yan, Q.Y.* 2022. Extracellular proteins of?Desulfovibrio vulgaris?as adsorbents and redox shuttles promote biomineralization of antimony. J Hazard Mater 426. ?
2021年?
[8]??Liu, S.Y., Dai, J.C., Wei, H.H., Li, S.Y., Wang, P., Zhu, T.B., Zhou, J.Z. and Qiu, D.R.* 2021. Dissimilatory nitrate reduction to ammonium (DNRA) and denitrification pathways are leveraged by cyclic amp receptor protein (CRP) paralogues based on electron donor/acceptor limitation in?Shewanella loihica?PV-4. Appl Environ Microb 87(2).?
[9]??Chai, X.J., Li, X.W., Hii, K.S., Zhang, Q., Deng, Q.H., Wan, L.L., Zheng, L.L., Lim, P.T., Tan, S.N., Mohd-Din, M., Song, C.L., Song, L.R., Zhou, Y.Y. and Cao, X.Y.* 2021. Blooms of diatom and dinoflagellate associated with nutrient imbalance driven by cycling of nitrogen and phosphorus in anaerobic sediments in Johor Strait (Malaysia). Mar Environ Res 169. ?
[10]?Hossain, M.S., Dai, J.C. and Qiu, D.R.* 2021. Dysbiosis of the shrimp (Penaeus monodon) gut microbiome with AHPND outbreaks revealed by 16S rRNA metagenomics analysis. Aquac Res 52(7), 3336-3349. ?
[11]?Hossain, M.S., Dai, J.C. and Qiu, D.R.* 2021. European eel (Anguilla anguilla) GI tract conserves a unique metagenomics profile in the recirculation aquaculture system (RAS). Aquacult Int 29(4), 1529-1544.?
[12]?Kim, D.D.1, Wan, L.L.1, Cao, X.Y., Klisarova, D., Gerdzhikov, D., Zhou, Y.Y., Song, C.L.* and Yoon, S.* 2021. Metagenomic insights into co-proliferation of?Vibrio?spp. and dinoflagellates?Prorocentrum?during a spring algal bloom in the coastal East China Sea. Water Res 204. ?
[13]?Li, H., Song, C.L.*, Yang, L., Qin, H.D., Cao, X.Y. and Zhou, Y.Y. 2021. Phosphorus supply pathways and mechanisms in shallow lakes with different regime. Water Res 193. ?
[14]?Li, H., Song, C.L. *, Yang, L., Qin, H.D., Cao, X.Y. and Zhou, Y.Y. 2021. Nutrients regeneration pathway, release potential, transformation pattern and algal utilization strategies jointly drove cyanobacterial growth and their succession. J Environ Sci 103, 255-267. ?
[15]?Mubashar, M., Ahmad, Z.L., Li, C., Zhang, H.Y., Xu, C., Wang, G.H., Qiu, D.R., Song, L.R. and Zhang, X.Z.* 2021. Carbon-negative and high-rate nutrient removal using mixotrophic microalgae. Bioresource Technol 340. ?
[16]?Song, Y., Mhuantong, W., Liu, S.Y., Pisutpaisal, N., Wongwilaiwalin, S., Kanokratana, P., Wang, A.J., Jiang, C.Y., Champreda, V., Qiu, D.R. and Liu, S.J.* 2021. Tropical and temperate wastewater treatment plants assemble different and diverse microbiomes. Appl Microbiol Biot 105(2), 853-867. ?
[17]?Sun, F., Deng, Q.H., Li, X.W., Tang, M.J., Ma, X.F., Cao, X.Y., Zhou, Y.Y. and Song, C.L.* 2021. Organic carbon quantity and quality jointly triggered the switch between dissimilatory nitrate reduction to ammonium (DNRA) and denitrification in biofilters. Chemosphere 280. ??
[18]?Tan, Q.Y., Chen, J.M., Chu, Y.F., Liu, W., Yang, L.L., Ma, L., Zhang, Y., Qiu, D.R., Wu, Z.B. and He, F.* 2021. Triclosan weakens the nitrification process of activated sludge and increases the risk of the spread of antibiotic resistance genes. J Hazard Mater 416. ?
[19]?Tang, M.J., Deng, Q.H., Cao, X.Y., Zhou, Y.Y., Sun, Q.Y. and Song, C.L.* 2021. Mechanisms and risks of joint control of nitrogen and phosphorus through sediment capping technology in a pilot-scale study. J Soil Sediment 21(10), 3427-3437. ?
[20]?Yang, L.1, Cao, X.Y.1, Chen, X.Y., Deng, Q.H., Wan, L.L., Li, X.W., Zhou, Y.Y. and Song, C.L.* 2021. Community composition and functional genes explain different ecological roles of heterotrophic bacteria attached to two bloom-forming cyanobacterial genera. Sci Total Environ 758.?
[21]?Zhang, M.Z., Xu, D.*, Bai, G.L., Cao, T.T., Liu, W., Hu, Z., Chen, D.S., Qiu, D.R. and Wu, Z.N. 2021. Changes of microbial community structure during the initial stage of biological clogging in horizontal subsurface flow constructed wetlands. Bioresource Technol 337. ?
[22]?Zhang, Z.M., Deng, Q.H., Wan, L.L., Cao, X.Y., Zhou, Y.Y. and Song, C.L.* 2021. Bacterial communities and enzymatic activities in sediments of long-term fish and crab aquaculture ponds. Microorganisms 9(3). ?
[23]?Zhang, Z.M., Deng, Q.H., Cao, X.Y., Zhou, Y.Y. and Song, C.L.* 2021. Patterns of sediment fungal community dependent on farming practices in aquaculture ponds. Front Microbiol 12. ?
2020年?
[24]?劉亞琦，劉雙元，高娜，戴景程，邱東茹*. 2020. 活性污泥菌膠團/生物絮團形成菌Pseudoduganella eburnean?的分離鑒定及基因組分析. 水生生物學(xué)報44(3):655-662.?
[25]?邱東茹*. 2020.藍(lán)藻胞外多聚物生物合成、群體形成與微囊藻水華. 水生生物學(xué)報44(5): 1008-1013.?
[26]?Chen, X.Y., Dolinova, I., Sevcu, A., Jurczak, T., Frankiewicz, P., Wojtal-Frankiewicz, A., Wan, L.L., Deng, Q.H., Song, C.L., Zhou, Y.Y. and Cao, X.Y.* 2020. Strategies adopted by?Aphanizomenon flos-aquae?in response to phosphorus deficiency and their role on growth. Environ Sci Eur 32(1). ?
[27]?Dai, J.C., Dong, A.J.*, Xiong, G.X., Liu, Y.Q., Hossain, M.S., Liu, S.Y., Gao, N., Li, S.Y., Wang, J., Qiu, D.R.*. 2020. Production of highly active extracellular amylase and cellulase from Bacillus subtilis ZIM3 and a recombinant strain with a potential application in tobacco fermentation. Front Microbiol 11:1539.?
[28]?Deng, Q.H., Wan, L.L., Li, X.W., Cao, X.Y., Zhou, Y.Y. and Song, C.L.* 2020. Metagenomic evidence reveals denitrifying community diversity rather than abundance drives nitrate removal in stormwater biofilters amended with different organic and inorganic electron donors. Chemosphere 257. ?
[29]?Han, F., Zhang, Y.*, Liu, Z.S., Wang, C., Luo, J., Liu, B.Y., Qiu, D.R., He, F. and Wu, Z.B.? 2020.? Effects of maifanite on growth, physiological and phytochemical process of submerged macrophytes?Vallisneria spiralis. Ecotox Environ Safe 189. ?
[30]?Li, S.Y., Zhao, L., Han, J.Y., Liu, S.Y., Dai, J.C., Fu, G.P. and Qiu, D.R.* 2020.?Azoarcus halotolerans?sp. nov., a novel member of Rhodocyclaceae isolated from activated sludge collected in Hong Kong. Int J Syst Evol Micr 70(11), 5799-5805.?
[31]?Li, X.W., Chai, X.J., Zheng, L.L., Deng, Q.H., Chen, X.Y., Zhang, Q., Wan, L.L., Song, C.L., Song, L.R., Zhou, Y.Y. and Cao, X.Y.* 2020. Coupling between benthic nutrient cycling and pelagic phytoplankton community in Taiwan Strait in spring 2018. J Mar Sci Eng 8(10).?
[32]?Lu, Z., Dai, J.C., Zheng, L.L., Teng, Z.R., Zhang, Q., Qiu, D.R., Song, L.R.* 2020. Disodium 2-oxoglutarate promotes carbon flux into astaxanthin and fatty acid biosynthesis pathways in Haematococcus. Bioresource Technol 299:122612. ?
[33]?Rasulov, B.A.*, Dai, J.C., Pattaeva, M.A., Liu, Y.H., Yili, A., Aisa, H.A., Qiu, D.R. and Li, W.J.? 2020.? Gene expression abundance dictated exopolysaccharide modification in?Rhizobium radiobacter?SZ4S7S14 as the cell's response to salt stress. Int J Biol Macromol 164, 4339-4347. ?
[34]?Tang, M.J., Deng, Q.H., Li, X.W., Cao, X.Y., Zhang, Z.M., Zhou, Y.Y., Sun, Q.Y. and Song, C.L.* 2020. The effect of natural materials used as sediment remediation on phosphorus and nitrogen control in a mesocosm. Environ Sci Eur 32(1).?
[35]?Cao, X.Y., Li, H., Zhou, Y.Y. and Song, C.L.* 2020. The shift of mutualistic relationships among algae, free-living and attached bacteria through different nutrient addition mode: a mesocosm study. J Freshwater Ecol 35(1), 535-548.?
2019年?
[36]?邱東茹*，高娜，安衛(wèi)星，余佃貞，夏明. 2019. 活性污泥微生物胞外多聚物生物合成途徑與菌膠團形成調(diào)控機制. 微生物學(xué)通報46(8): 2080-2089.?
[37]?王晶，高娜，劉雙元，戴景程，劉亞琦，邱東茹*. 2019. 活性污泥微生物解殼聚糖松江菌中菌膠團形成相關(guān)大型基因簇的鑒定和分析. 微生物學(xué)通報46(8): 1946-1953.?
[38]?Dai, J.C., Liu, Y.Q., Liu, S.Y., Li, S.Y., Gao, N., Wang, J., Zhou, J.Z. and Qiu, D.R.* 2019. Differential gene content and gene expression for bacterial evolution and speciation of?Shewanella?in terms of biosynthesis of heme and heme-requiring proteins. BMC Microbiol 19. ?
[39]?Cao, X.Y., Chen, X.Y., Song, C.L.* and Zhou, Y.Y. 2019. Comparison of phosphorus sorption characteristics in the soils of riparian buffer strips with different land use patterns and distances from the shoreline around Lake Chaohu. J Soil Sediment 19(5), 2322-2329. ?
[40]?Song, C.L., Cao, X.Y., Zhou, Y.Y., Azzaro, M., Monticelli, L.S., Maimone, G., Azzaro, F., La Ferla, R. and Caruso, G.* 2019. Nutrient regeneration mediated by extracellular enzymes in water column and interstitial water through a microcosm experiment. Sci Total Environ 670, 982-992.?
[41]?Wan, L.L., Chen, X.Y., Deng, Q.H., Yang, L., Li, X.W., Zhang, J.Y., Song, C.L., Zhou, Y.Y. and Cao, X.Y.* 2019. Phosphorus strategy in bloom-forming cyanobacteria (Dolichospermum?and?Microcystis) and its role in their succession. Harmful Algae 84, 46-55. ?
[42]?Wan L.L., Cao, L., Cao, X.Y., Wang, Z.C., Zhou, Y.Y. and Song. C.L.* 2019. The optimized key parameters and their mechanisms for simultaneous nitrogen and phosphorus removal in stormwater biofilters: A pilot study. Environ Eng Sci 36(3): 372-383.???
[43]?Zhang, Y., Song, C.L.*, Zhou, Z.J., Cao, X.Y. and Zhou, Y.Y. 2019. Coupling between nitrification and denitrification as well as its effect on phosphorus release in sediments of Chinese shallow lakes. Water-Sui 11(9).?
2018年?
[44]?Gao, N., Xia, M., Dai, J.C., Yu, D.Z., An, W.X., Li, S.Y., Liu, S.Y., He, P.H., Zhang, L.P., Wu, Z.B., Bi, X.Z., Chen, S.W., Haft, D.H. and Qiu, D.R.* 2018. Both widespread PEP-CTERM proteins and exopolysaccharides are required for floc formation of?Zoogloea resiniphila?and other activated sludge bacteria. Environ Microbiol 20(5), 1677-1692. ?
[45]?Cao, X.Y., Song, C.L.*, Xiao, J. and Zhou Y.Y. 2018. The optimal width and mechanism of riparian buffers for storm water nutrient removal in the?Chinese eutrophic Lake Chaohu watershed. Water 1489:1-11.??
[46]?Cao, X.Y., Wan, L.L., Xiao, J., Chen, X.Y., Zhou, Y.Y., Wang, Z.C. and Song, C.L.* 2018.? Environmental effects by introducing?Potamogeton crispus?to recover a eutrophic Lake. Sci Total Environ 621, 360-367.??
[47]?Song, C.L., Cao, X.Y., Zhou, Y.Y., Azzaro, M., Monticelli, L.S., Leonardi, M., La Ferla, R. and Caruso, G.* 2018. Different pathways of nitrogen and phosphorus regeneration mediated by extracellular enzymes in temperate lakes under various trophic state. Environ Sci Pollut R 25(31), 31603-31615.?
[48]?Song, C.L., S？ndergaard, M., Cao, X.Y. and Zhou, Y.Y.* 2018. Nutrient utilization strategies of algae and bacteria after the termination of nutrient amendment with different phosphorus dosage: A mesocosm case. Geomicrobiol J 35(4), 294-299. ?
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[8]???邱東茹，夏明，柏仕杰. 一種殺藻劑在控制微囊藻水華中的用途，CN201310669686.9，2016，發(fā)明專利。?
